Papers

Google Scholar profile

    †: (co-)1st author, *: (co-)corresponding author. Click the underlined title to access a paper.
  1. Yuji Hirono, Hyukpyo Hong, Jae Kyoung Kim, Robust perfect adaptation of reaction fluxes ensured by network topology, arXiv, 2023
  2. Hyukpyo Hong†, Eunjin Eom†, Hyojung Lee, Sunhwa Choi*, Boseung Choi*, Jae Kyoung Kim*, Overcoming Bias in Estimating Epidemiological Parameters with Realistic History-Dependent Disease Spread Dynamics, Nature Communications, 2024
  3. Hyeontae Jo†, Hyukpyo Hong†, Hyung Ju Hwang, Won Chang, Jae Kyoung Kim*, Density physics-informed neural networks reveal sources of cell heterogeneity in signal transduction, Patterns, 2023
  4. Hyukpyo Hong†, Mark Jayson Cortez, Yu-Yu Cheng, Hang Joon Kim, Boseung Choi*, Krešimir Josić*, and Jae Kyoung Kim*, Inferring delays in partially observed gene regulation processes, Bioinformatics, 2023
  5. Hyukpyo Hong, Bryan Hernandez, Jinsu Kim, Jae Kyoung Kim*, Computational translation framework identifies biochemical reaction networks with special topologies and their long-term dynamics, SIAM Journal on Applied Mathematics, 2023
  6. Hyukpyo Hong†, Ji Yun Noh†, Hyojung Lee, Sunhwa Choi, Boseung Choi, Jae Kyoung Kim*, Eui-Cheol Shin*, Modeling incorporating the severity-reducing long-term immunity: higher viral transmission paradoxically reduces severe COVID-19 during endemic transition, Immune Network, 2022
  7. Dae Wook Kim†, Hyukpyo Hong† and Jae Kyoung Kim*, Systematic inference identifies a major source of heterogeneity in cell signaling dynamics: The rate-limiting step number, Science Advances, 2022
  8. Yun Min Song†, Hyukpyo Hong† and Jae Kyoung Kim*, Universally valid reduction of multiscale stochastic biochemical systems with simple non-elementary propensities, PLoS Computational Biology, 2021
  9. Mark Jayson Cortez†, Hyukpyo Hong, Boseung Choi*, Jae KyoungKim*, and Krešimir Josić*, Hierarchical Bayesian models for inference in biochemical reactions with delays, Bioinformatics, 2021
  10. Jaehyoung Hong†, Su Jung Choi†, Se Ho Park, Hyukpyo Hong, Victoria Booth, Eun Yeon Joo*, and Jae Kyoung Kim*, Personalized sleep-wake patterns aligned with circadian rhythm relieve daytime sleepiness, iScience, 2021
  11. Hyukpyo Hong†, Jinsu Kim†, M Ali Al-Radhawi, Eduardo Sontag, and Jae Kyoung Kim*. Derivation of stationary distributions of biochemical reaction networks via structure transformation, Communications Biology, 2021.

Book chapters

  1. Hyukpyo Hong, Boseung Choi, and Jae Kyoung Kim*, Beyond the Michaelis-Menten: Bayesian inference for enzyme kinetic analysis, Quentin Vanhaelen (Ed.), Computational Methods for Estimating the Kinetics Parameters of Biological Systems, vol 2385. Humana, New York, NY.

Invited talks

    Abbreviations
    SMB: Society for Mathematical Biology, KSMB: Korean SMB, SIAM: Society for Industrial and Applied Mathematics,
    KSIAM: Korean SIAM, KMS: Korean Mathematical Society

  • October 25, 2024: Applied Math Seminar at the University of Cincinnati, Cincinnati, OH, USA
  • October 7, 2024: Seminar at the University of the Philippines Diliman, Online
  • August 1, 2024: Seminar at Pusan National University, Busan, Korea
  • July 31, 2024: Biomedical Mathematics Seminar at Institute for Basic Science, Daejeon, Korea
  • July 2–4, 2024: SMB Annual Meeting, Seoul, Korea
  • June 4, 2024: Data Computational Sciences Special Lecture at Korea University, Sejong, Korea
  • June 3, 2024: Data Science Seminar at Sogang University, Seoul, Korea
  • May 23, 2024: Center for Mathematical Machine Learning and its Applications (CM2LA) Seminar at POSTECH, Pohang, Korea
  • April 25, 2024: Mathematical Biology Seminar at UIUC, Champaign, IL, USA
  • August 17, 2023: ICIAM 2023 Satellite Workshop: Stochastic Modeling and Data Analysis for Biological Systems, Daejeon, Korea
  • July 17, 2023: SMB Annual Meeting, Minisymposium, Columbus, OH, United States
  • June 27, 2023: The 8th CIJK International Conference on Mathematical and Theoretical Biology, Minisymposium, Jeju, Korea
  • May 19, 2023: KSIAM Spring Conference, Special session, Pyeongchang, Korea
  • December 19, 2022: Mini-workshop on Recent Trends in Pure and Applied Mathematics, Daejeon, Korea
  • November 21, 2022: Population Approach Group Korea Annual Meeting, Seoul, Korea
  • October 19, 2022: Global KMS International Conference, Special session, Seoul, Korea
  • June 25, 2022: KSMB Annual Meeting, Special session, Yeosu, Korea
  • May 28, 2022: KSIAM Spring Conference, Special session, Daejeon, Korea
  • August 27, 2021: KSMB Annual Meeting, Special session, Online, Korea
  • June 16, 2021: SMB Annual Meeting, Minisymposium, Online
  • May 27, 2021: SIAM Conference on Dynamical Systems, Minisymposium, Online
  • May 13, 2021: Seminar on the Mathematics of Reaction Networks [link], Online, the recorded video is available in YouTube [link]
  • October 24, 2020: KMS Annual Meeting , Minisymposium, Online

Contirubed talks and Posters

  • June 27, 2024: KSMB-SMB Satellite Workshop: Tutorials for Recent Advances in Methods of Biomedical Mathematics, Poster, Daejeon, Korea
  • June 10, 2024: SPT Workshop on Reaction Networks, Cagliari, Italy
  • July 14, 2023: Dynamical Systems in the Life Sciences, Poster, Columbus, OH, United States
  • December 6, 2022: Workshop on Non-equilibrium Phenomena in Physics and Biology, Poster, Gyeongju, Korea
  • November 26, 2022: KSIAM Annual Conference, Contributed talk, Jeju, Korea
  • October 11, 2022: International Conference on Systems Biology, Short talk, Berlin, Germany
  • July 14, 2022: SIAM Conference on the Life Sciences, Contributed talk, Pittsburgh, USA
  • May 17, 2022: SRBR Biennial Conference, Poster, Jacksonville, USA
  • December 17, 2021: KSMB Winter Conference, Poster, Jeju, Korea
  • December 4, 2021: KSIAM Annual Conference, Poster, Busan, Korea
  • September 28, 2021: Non-equilibrium collective phenomena workshop, Poster, Gyeongju, Korea
  • June 26, 2021: KSIAM Spring Conference, Contributed talk, Gangneung, Korea
  • November 13, 2020: KSIAM Annual Conference, Poster, Online
  • August 20, 2020: SMB Annual meeting, Contributed talk, Online
  • July 23, 2019: SMB Annual meeting, Poster, Montreal, Canada
  • July 8, 2019: Chemical Reaction Networks Workshop [link], Short talk, Torino, Italy
  • May 18, 2019: Spring meeting of Korean Society for Industrial and Applied Mathematics, Contributed talk, Seoul, Korea
  • May 11, 2019: A3 Workshop on Mathematical Biology, Contributed talk, Beijing, China