Papers
Google Scholar Profile
In preparation or prepint
- Hyukpyo Hong, Seewoo Lee, Necessary and sufficient conditions of the existence of finite dimensional subspace invariant under polynomial ODEs, in preperation
- Ella Buelling, Wolfram Liebermeister, Hyukpyo Hong, Connection between structural sensiticity analysis and metabolic control analysis, in preperation
- Hyukpyo Hong, Matthew Colbrook, Qin Li, Hanbaek Lyu, Efficient algorithm for finding a finite-dimensional Koopman representation, in preperation
- Hyukpyo Hong, Diego Rojas La Luz, Gheorghe Craciun, Asymptotic absolute concentration robustness in reaction networks, in preperation
Published or accepted
†: (co-)1st author, *: (co-)corresponding author. Click the underlined title to access a paper.
- Hyukpyo Hong†, Seokhwan Moon†, Yuji Hirono†*, Jae Kyoung Kim*, Topological Criterion for Robust Perfect Adaptation of Reaction Fluxes in Biological Networks, accepted in iScience, 2025
- Hyukpyo Hong†, Eunjin Eom†, Hyojung Lee, Sunhwa Choi*, Boseung Choi*, Jae Kyoung Kim*, Overcoming Bias in Estimating Epidemiological Parameters with Realistic History-Dependent Disease Spread Dynamics, Nature Communications, 2024
- Hyeontae Jo†, Hyukpyo Hong†, Hyung Ju Hwang, Won Chang, Jae Kyoung Kim*, Density physics-informed neural networks reveal sources of cell heterogeneity in signal transduction, Patterns, 2023
- Hyukpyo Hong†, Mark Jayson Cortez, Yu-Yu Cheng, Hang Joon Kim, Boseung Choi*, Krešimir Josić*, and Jae Kyoung Kim*, Inferring delays in partially observed gene regulation processes, Bioinformatics, 2023
- Hyukpyo Hong, Bryan Hernandez, Jinsu Kim, Jae Kyoung Kim*, Computational translation framework identifies biochemical reaction networks with special topologies and their long-term dynamics, SIAM Journal on Applied Mathematics, 2023
- Hyukpyo Hong†, Ji Yun Noh†, Hyojung Lee, Sunhwa Choi, Boseung Choi, Jae Kyoung Kim*, Eui-Cheol Shin*, Modeling incorporating the severity-reducing long-term immunity: higher viral transmission paradoxically reduces severe COVID-19 during endemic transition, Immune Network, 2022
- Dae Wook Kim†, Hyukpyo Hong† and Jae Kyoung Kim*, Systematic inference identifies a major source of heterogeneity in cell signaling dynamics: The rate-limiting step number, Science Advances, 2022
- Yun Min Song†, Hyukpyo Hong† and Jae Kyoung Kim*, Universally valid reduction of multiscale stochastic biochemical systems with simple non-elementary propensities, PLoS Computational Biology, 2021
- Mark Jayson Cortez†, Hyukpyo Hong, Boseung Choi*, Jae KyoungKim*, and Krešimir Josić*, Hierarchical Bayesian models for inference in biochemical reactions with delays, Bioinformatics, 2021
- Jaehyoung Hong†, Su Jung Choi†, Se Ho Park, Hyukpyo Hong, Victoria Booth, Eun Yeon Joo*, and Jae Kyoung Kim*, Personalized sleep-wake patterns aligned with circadian rhythm relieve daytime sleepiness, iScience, 2021
- Hyukpyo Hong†, Jinsu Kim†, M Ali Al-Radhawi, Eduardo Sontag, and Jae Kyoung Kim*. Derivation of stationary distributions of biochemical reaction networks via structure transformation, Communications Biology, 2021.
Book chapters
- Hyukpyo Hong, Boseung Choi, and Jae Kyoung Kim*, Beyond the Michaelis-Menten: Bayesian inference for enzyme kinetic analysis, Quentin Vanhaelen (Ed.), Computational Methods for Estimating the Kinetics Parameters of Biological Systems, vol 2385. Humana, New York, NY.
Invited talks
Abbreviations
SMB: Society for Mathematical Biology, KSMB: Korean SMB, SIAM: Society for Industrial and Applied Mathematics,
KSIAM: Korean SIAM, KMS: Korean Mathematical Society
SMB: Society for Mathematical Biology, KSMB: Korean SMB, SIAM: Society for Industrial and Applied Mathematics,
KSIAM: Korean SIAM, KMS: Korean Mathematical Society